Index

_

_aux_blackbox() (pyselfi_examples.grf.model.blackbox_GRF.blackbox method) (pyselfi_examples.simbelmyne.model.blackbox_SBMY.blackbox method) _average() (pyselfi.likelihood.likelihood class method) _clean_sbmy_outputs() (pyselfi_examples.simbelmyne.model.blackbox_SBMY.blackbox method) _compute_f_d() (pyselfi.likelihood.likelihood method) _compute_grad_d() (pyselfi.likelihood.likelihood method) _compute_inv_N() (pyselfi.posterior.posterior method) _compute_inverse_posterior_covariance() (pyselfi.posterior.posterior method) _compute_Phi() (pyselfi_examples.simbelmyne.model.blackbox_SBMY.blackbox method) _compute_Phi_d() (pyselfi.likelihood.likelihood method) _compute_Phi_DM() (pyselfi_examples.simbelmyne.model.blackbox_SBMY.blackbox method) _covariance() (pyselfi.likelihood.likelihood class method) _get_cosmic_variance() (pyselfi.power_spectrum.prior.power_spectrum_prior method) _get_covariance() (pyselfi.lotkavolterra.prior.lotkavolterra_prior method) (pyselfi.power_spectrum.prior.power_spectrum_prior method) _get_inverse_covariance() (pyselfi.lotkavolterra.prior.lotkavolterra_prior method) (pyselfi.power_spectrum.prior.power_spectrum_prior method)

_get_perturb_theta() (pyselfi.likelihood.likelihood method) _get_posterior_covariance() (pyselfi.posterior.posterior method) _get_posterior_covariance_alt() (pyselfi.posterior.posterior method) _get_posterior_mean() (pyselfi.posterior.posterior method) _get_posterior_mean_alt() (pyselfi.posterior.posterior method) _get_powerspectrum_from_cosmo() (pyselfi_examples.grf.model.blackbox_GRF.blackbox method) (pyselfi_examples.simbelmyne.model.blackbox_SBMY.blackbox method) _get_powerspectrum_from_theta() (pyselfi_examples.grf.model.blackbox_GRF.blackbox method) (pyselfi_examples.simbelmyne.model.blackbox_SBMY.blackbox method) _get_rbf() (pyselfi.lotkavolterra.prior.lotkavolterra_prior method) (pyselfi.power_spectrum.prior.power_spectrum_prior method) _get_time_variance() (pyselfi.lotkavolterra.prior.lotkavolterra_prior method) _gradient() (pyselfi.likelihood.likelihood method) _inverse_covariance() (pyselfi.likelihood.likelihood class method) _run_mock() (pyselfi_examples.simbelmyne.model.blackbox_SBMY.blackbox method) _run_sim() (pyselfi_examples.simbelmyne.model.blackbox_SBMY.blackbox method) _save_cosmo() (pyselfi_examples.simbelmyne.model.blackbox_SBMY.blackbox method) _setup_parfiles() (pyselfi_examples.simbelmyne.model.blackbox_SBMY.blackbox method)

A

add_sim() (pyselfi.pool.pool method)

B

blackbox (class in pyselfi_examples.grf.model.blackbox_GRF) (class in pyselfi_examples.lotkavolterra.model.blackbox_LV) (class in pyselfi_examples.simbelmyne.model.blackbox_SBMY)

C

compute() (pyselfi.likelihood.likelihood method) (pyselfi.lotkavolterra.prior.lotkavolterra_prior method) (pyselfi.posterior.posterior method) (pyselfi.power_spectrum.prior.power_spectrum_prior method) compute_C_0() (pyselfi.likelihood.likelihood method) compute_Fisher_matrix() (pyselfi.lotkavolterra.selfi.lotkavolterra_selfi method) compute_grad_f_omega() (pyselfi.lotkavolterra.selfi.lotkavolterra_selfi method) compute_grad_f_omega_direct() (pyselfi.lotkavolterra.selfi.lotkavolterra_selfi method)

compute_gradient() (pyselfi.likelihood.likelihood method) compute_inv_C_0() (pyselfi.likelihood.likelihood method) compute_likelihood() (pyselfi.selfi.selfi method) compute_pool() (pyselfi_examples.grf.model.blackbox_GRF.blackbox method) (pyselfi_examples.lotkavolterra.model.blackbox_LV.blackbox method) (pyselfi_examples.simbelmyne.model.blackbox_SBMY.blackbox method) compute_posterior() (pyselfi.selfi.selfi method) compute_prior() (pyselfi.selfi.selfi method)

D

data_model() (pyselfi.likelihood.likelihood method)

E

evaluate() (pyselfi_examples.grf.model.blackbox_GRF.blackbox method) (pyselfi_examples.lotkavolterra.model.blackbox_LV.blackbox method) (pyselfi_examples.simbelmyne.model.blackbox_SBMY.blackbox method)

ExecuteBashCommand() (in module pyselfi.utils) ExecuteBashCommandMute() (in module pyselfi.utils) ExecuteBashCommandOutput() (in module pyselfi.utils)

F

FatalError() (in module pyselfi.utils)

finished (pyselfi.pool.pool property) FisherRao_distance() (pyselfi.lotkavolterra.selfi.lotkavolterra_selfi method)

G

gamma (pyselfi.power_spectrum.prior.power_spectrum_prior property) gamma_log (pyselfi.power_spectrum.prior.power_spectrum_prior property) gammaX (pyselfi.lotkavolterra.prior.lotkavolterra_prior property) gammaY (pyselfi.lotkavolterra.prior.lotkavolterra_prior property)

get_alpha_norm() (pyselfi.lotkavolterra.prior.lotkavolterra_prior method) get_index() (in module pyselfi.utils) get_indices() (in module pyselfi.utils) get_t_chaos() (pyselfi.lotkavolterra.prior.lotkavolterra_prior method) get_t_smooth() (pyselfi.lotkavolterra.prior.lotkavolterra_prior method)

I

INDENT() (in module pyselfi.utils)

L

likelihood (class in pyselfi.likelihood) load() (pyselfi.likelihood.likelihood method) (pyselfi.lotkavolterra.prior.lotkavolterra_prior class method) (pyselfi.lotkavolterra.selfi.lotkavolterra_selfi method) (pyselfi.posterior.posterior class method) (pyselfi.power_spectrum.prior.power_spectrum_prior class method) load_likelihood() (pyselfi.selfi.selfi method) load_posterior() (pyselfi.selfi.selfi method) load_prior() (pyselfi.selfi.selfi method)

loglikelihood_hyperparams() (pyselfi.lotkavolterra.selfi.lotkavolterra_selfi method) (pyselfi.power_spectrum.selfi.power_spectrum_selfi method) logpdf() (pyselfi.likelihood.likelihood method) (pyselfi.posterior.posterior method) (pyselfi.power_spectrum.prior.power_spectrum_prior method) logposterior_hyperparameters() (pyselfi.lotkavolterra.selfi.lotkavolterra_selfi method) (pyselfi.power_spectrum.selfi.power_spectrum_selfi method) logprior_hyperparameters() (pyselfi.power_spectrum.selfi.power_spectrum_selfi method) lotkavolterra_prior (class in pyselfi.lotkavolterra.prior) lotkavolterra_selfi (class in pyselfi.lotkavolterra.selfi)

M

Mahalanobis_ms_check() (pyselfi.lotkavolterra.selfi.lotkavolterra_selfi method) make_data() (pyselfi_examples.grf.model.blackbox_GRF.blackbox method) (pyselfi_examples.lotkavolterra.model.blackbox_LV.blackbox method) (pyselfi_examples.simbelmyne.model.blackbox_SBMY.blackbox method) make_demographic_noise_cov() (pyselfi_examples.lotkavolterra.model.blackbox_LV.blackbox method) make_observational_noise_cov() (pyselfi_examples.lotkavolterra.model.blackbox_LV.blackbox method) make_signal() (pyselfi_examples.lotkavolterra.model.blackbox_LV.blackbox method) make_survey_geometry() (pyselfi_examples.simbelmyne.model.blackbox_SBMY.blackbox method) module pyselfi.likelihood pyselfi.lotkavolterra.prior pyselfi.lotkavolterra.selfi pyselfi.pool pyselfi.posterior pyselfi.power_spectrum.prior pyselfi.power_spectrum.selfi pyselfi.selfi pyselfi.utils pyselfi_examples.grf.model.blackbox_GRF pyselfi_examples.lotkavolterra.model.blackbox_LV pyselfi_examples.simbelmyne.model.blackbox_SBMY

N

N_sims (pyselfi.pool.pool property)

Nbin_max() (pyselfi.power_spectrum.prior.power_spectrum_prior method) Nbin_min() (pyselfi.power_spectrum.prior.power_spectrum_prior method)

O

optimize_prior() (pyselfi.lotkavolterra.selfi.lotkavolterra_selfi method) (pyselfi.power_spectrum.selfi.power_spectrum_selfi method)

P

p_load() (in module pyselfi.utils) p_loadtxt() (in module pyselfi.utils) p_save() (in module pyselfi.utils) p_savetxt() (in module pyselfi.utils) p_savez() (in module pyselfi.utils) pool (class in pyselfi.pool) posterior (class in pyselfi.posterior) power_spectrum_prior (class in pyselfi.power_spectrum.prior) power_spectrum_selfi (class in pyselfi.power_spectrum.selfi) PrintCommandLine() (in module pyselfi.utils) PrintDiagnostic() (in module pyselfi.utils) PrintError() (in module pyselfi.utils) PrintInfo() (in module pyselfi.utils) PrintLeftType() (in module pyselfi.utils) PrintMessage() (in module pyselfi.utils) PrintPythonCommand() (in module pyselfi.utils) PrintValue() (in module pyselfi.utils) PrintWarning() (in module pyselfi.utils) pyselfi.likelihood module pyselfi.lotkavolterra.prior module

pyselfi.lotkavolterra.selfi module pyselfi.pool module pyselfi.posterior module pyselfi.power_spectrum.prior module pyselfi.power_spectrum.selfi module pyselfi.selfi module pyselfi.utils module pyselfi_examples.grf.model.blackbox_GRF module pyselfi_examples.lotkavolterra.model.blackbox_LV module pyselfi_examples.simbelmyne.model.blackbox_SBMY module

R

regular_inv() (in module pyselfi.utils) restrict_posterior() (pyselfi.power_spectrum.selfi.power_spectrum_selfi method)

restrict_prior() (pyselfi.power_spectrum.selfi.power_spectrum_selfi method) run_simulations() (pyselfi.likelihood.likelihood method) (pyselfi.selfi.selfi method)

S

save() (pyselfi.likelihood.likelihood method) (pyselfi.lotkavolterra.prior.lotkavolterra_prior method) (pyselfi.lotkavolterra.selfi.lotkavolterra_selfi method) (pyselfi.pool.pool method) (pyselfi.posterior.posterior method) (pyselfi.power_spectrum.prior.power_spectrum_prior method) save_likelihood() (pyselfi.selfi.selfi method) save_posterior() (pyselfi.selfi.selfi method)

save_prior() (pyselfi.selfi.selfi method) save_replace_attr() (in module pyselfi.utils) save_replace_dataset() (in module pyselfi.utils) score_compression() (pyselfi.lotkavolterra.selfi.lotkavolterra_selfi method) selfi (class in pyselfi.selfi) set_alpha_norm() (pyselfi.lotkavolterra.prior.lotkavolterra_prior method) set_t_chaos() (pyselfi.lotkavolterra.prior.lotkavolterra_prior method) set_t_smooth() (pyselfi.lotkavolterra.prior.lotkavolterra_prior method)

U

UNINDENT() (in module pyselfi.utils)

X

Xobs() (pyselfi_examples.lotkavolterra.model.blackbox_LV.blackbox method)

Y

Yobs() (pyselfi_examples.lotkavolterra.model.blackbox_LV.blackbox method)